PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10585_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 390aa    MW: 43953.2 Da    PI: 6.3588
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10585_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.1e-1793183199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k ++ps+v+   +l lpkkf+++h  k  +++ + lede+g ++e ++     +  + l++GW++F   ++L egD++vF+l++   f+++v 
  Neem_10585_f_2  93 FIKCMLPSHVSGGFWLGLPKKFCTDHLPK--KDTIIALEDENGHEYETNY--LAEK--IGLSGGWRGFSMVHKLVEGDVLVFHLIR--PFKFKVY 179
                     89************************533..5679***************..4444..44***********************998..7777888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     + r+
  Neem_10585_f_2 180 ISRS 183
                     8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-2087184IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2388187IPR015300DNA-binding pseudobarrel domain
CDDcd100176.13E-2791182No hitNo description
PROSITE profilePS5086312.49293184IPR003340B3 DNA binding domain
PfamPF023622.0E-1593182IPR003340B3 DNA binding domain
SMARTSM010191.5E-2193184IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAIAPNERES SSDSPSEVKR ARPPIKKENM LDSKKVICSG PENSKCNATV ICSSEKRKRA  60
TYDNLYDNEE TKSAVMMQAT HVQANLAPEF PSFIKCMLPS HVSGGFWLGL PKKFCTDHLP  120
KKDTIIALED ENGHEYETNY LAEKIGLSGG WRGFSMVHKL VEGDVLVFHL IRPFKFKVYI  180
SRSRGSDEVD GALGLLQLDV CHRQMHYEKH TSLCKEEKDK YWEPLPQDIP QITLEKDNHM  240
ICSNIIQRAS DQSEDDSKNP GLLDGLNCRL AAGMISETIN IADAIRASKL TTPPDNFAIW  300
DKTLKAFKLM GMNVGFLQAR LDQLMNLSSK SRRCEEARLE RTNAEEEKRI LELKLSEVSG  360
RIYKLDSEIG VLEVNSDGLD VMFQELAKAP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021652673.11e-130B3 domain-containing protein Os01g0234100-like
TrEMBLV4S7791e-146V4S779_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006423042.11e-147(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16718911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-42B3 family protein