PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10430_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family G2-like
Protein Properties Length: 325aa    MW: 35392.3 Da    PI: 5.5958
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10430_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.85.6e-3449103155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Neem_10430_f_2  49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103
                     79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.48546106IPR017930Myb domain
SuperFamilySSF466898.24E-1848103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-3248104IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-2549104IPR006447Myb domain, plants
PfamPF002491.3E-951102IPR001005SANT/Myb domain
PfamPF143791.7E-10135171IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MYQPNSVPSS SLVRSNSLVH GQHLDCGSSQ MDPMNGGNNV NNNPSLASKQ RLRWTHELHE  60
RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDGKKVDKK  120
ETGDMLSSLD GSSGMQITEA LKLQMEVQRQ LQLRIEAQGK YLKKIIEEQQ RLSGVLSDAP  180
ESGDLDPSGD DCPETDKKTD PATPAPTSES PLQDKAAKEY ASAKSLSLDE SFSSQHESMT  240
PDSACNVGTP SESPKGESST KKQRVAMETT YTKPEMVLTH PILESSLSSS YQQQHNVFLS  300
GDQFDPSSGM SVGKEDHVEV SGNDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-2449106259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-2449106259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-2449106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-2449106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-2449106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-2449106158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-2449106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-2449106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-2449106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-2449106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-2449106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-2449106259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449962.10.0myb family transcription factor PHL7 isoform X1
SwissprotQ9SJW01e-123PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A2H5N5F10.0A0A2H5N5F1_CITUN; Uncharacterized protein
STRINGXP_006449962.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87532536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.14e-99G2-like family protein