PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10415_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 295aa    MW: 33599.2 Da    PI: 8.5488
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10415_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.23.8e-1098164162
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE- CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvlt 62 
                     f+k+l +sdv++ gr+v+pkkfae++   +++++++ + ++d +  + W++k+++  ++++++y+++
  Neem_10415_f_2  98 FEKQLQNSDVSSAGRIVIPKKFAETNlpILNEKGGFWMNFNDMDYpQIWTFKFRFwpNNRGRMYLFE 164
                     99**************************7778899*******6666*******99655555557765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-1695214IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-1296164IPR015300DNA-binding pseudobarrel domain
CDDcd100173.45E-1296229No hitNo description
SMARTSM010190.006898194IPR003340B3 DNA binding domain
PfamPF023622.8E-798164IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MVIISEFGDV VLTPGKPATG DQVNQGGGNR EPPAAGSSRN CEYRRRASRR QNHRFAPDNP  60
LVFQHRLPRL PLQPPPAPPV RLYFSLQEIN PFVMRFLFEK QLQNSDVSSA GRIVIPKKFA  120
ETNLPILNEK GGFWMNFNDM DYPQIWTFKF RFWPNNRGRM YLFENASGLK SPASSQSSTF  180
LLLNAMQLIC CFTENLPGEF TRKYCLELGD YLMVFKDDIN GAYLVRARKK AAYVPNGAMG  240
NNANASYPNM EKYLRYGDNN NNQHDFRDGP TPDYAHLVMT PCCESLDLDL SEFLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A6e-27942311107B3 domain-containing transcription factor FUS3
6j9b_D6e-27942311107B3 domain-containing transcription factor FUS3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438851.25e-71uncharacterized protein LOC18043546
RefseqXP_015387151.15e-71uncharacterized protein LOC107177608
TrEMBLA0A2H5N9Q51e-73A0A2H5N9Q5_CITUN; Uncharacterized protein
STRINGXP_006438851.14e-70(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2275334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.17e-29B3 family protein