PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10285_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 186aa    MW: 21131.7 Da    PI: 5.6662
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10285_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00023254123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C  C++ F++   L  H++ H
  Neem_10285_f_1 32 YECVFCKRGFTTAQALGGHMNIH 54
                    99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.47E-63058No hitNo description
Gene3DG3DSA:3.30.160.604.7E-43058IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.993259IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MESNTHEDSK TSSEETDRSE QANDDMGTGR SYECVFCKRG FTTAQALGGH MNIHRKDRAK  60
NRPNSVPSIS EKADENYATF RSHTPFQSYP TAHHHFAMAS EVHVNYQTYF PASTWDERSP  120
QTYHSNDIHS PYGNNPQHLN LFGDDVWRGN LSLAVGPSHV PEDEERREGA SKQDELDLEL  180
RLGHDP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007050365.11e-78PREDICTED: transcriptional regulator TAC1
TrEMBLA0A061DQ223e-77A0A061DQ22_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRINGEOX945224e-78(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15373717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.17e-17C2H2 family protein