PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10089_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 283aa    MW: 32240.6 Da    PI: 5.1437
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10089_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.15e-3070128259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d +v++itY+++Hnh+
  Neem_10089_f_2  70 SDLWSWRKYGQKPIKGSPHPRGYYRCSTSkGCSAKKQVERCRTDASVLIITYTSTHNHP 128
                     699***********************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-3163130IPR003657WRKY domain
SuperFamilySSF1182907.19E-2667130IPR003657WRKY domain
SMARTSM007741.3E-3569129IPR003657WRKY domain
PROSITE profilePS5081130.96370130IPR003657WRKY domain
PfamPF031062.5E-2571128IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAYATAGKKR FHHTSPEIRS ERSEFTQPEE VAELNPETQA SKRRKVVEKT VVRVRIGENA  60
GKLKNEGPPS DLWSWRKYGQ KPIKGSPHPR GYYRCSTSKG CSAKKQVERC RTDASVLIIT  120
YTSTHNHPCP DLQNINLTKQ SKESAQTQAT ETEEDHPTSS KQQEETQSQE EEKQNQSIMN  180
MTTSDEDVSK DHFHYLQSPI SCTQDIMINQ EDPFSGNLEK THESLNLLLD EEPLSYQNLM  240
TFSTPKSEEN DFFDELEELP TSSVFTSFMR SSLFDEGIPV VPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-20701301779Disease resistance protein RRS1
5w3x_D1e-20701301779Disease resistance protein RRS1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7089694e-38JF708969.1 Dimocarpus longan WRKY transcription factor 3-1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492342.11e-131probable WRKY transcription factor 65
TrEMBLA0A067HGC01e-130A0A067HGC0_CITSI; Uncharacterized protein
TrEMBLA0A2H5NXI61e-130A0A2H5NXI6_CITUN; Uncharacterized protein
STRINGXP_006492342.11e-131(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153711117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.19e-34WRKY DNA-binding protein 35