PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy022744
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LSD
Protein Properties Length: 146aa    MW: 15186.7 Da    PI: 7.7401
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59538358PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1413.1e-132953125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               C+gCr+lL YP GA+sV+Ca+C++V
  Ahy022744 29 CSGCRNLLLYPVGASSVCCAVCNAV 53
               ************************9 PP

2zf-LSD146.84.9e-156892125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               CggC+tlL+Y rGA+sV+C++C+tV
  Ahy022744 68 CGGCHTLLMYIRGATSVQCSCCHTV 92
               ************************9 PP

3zf-LSD143.36e-14106130125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                Cg+Cr lL+Y +GA+sV+Ca+C++V
  Ahy022744 106 CGSCRMLLMYQYGATSVKCAVCNFV 130
                ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.103.2E-419127No hitNo description
TIGRFAMsTIGR010537.4E-132656IPR005735Zinc finger, LSD1-type
SuperFamilySSF486955.16E-529127IPR011031Multihaem cytochrome
PfamPF069431.9E-102953IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.2E-146594IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126892IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.9E-13103132IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-12106130IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPHTPPSA NGQQSQLVCS GCRNLLLYPV GASSVCCAVC NAVTAVPPPG  60
TEMAQLICGG CHTLLMYIRG ATSVQCSCCH TVNLAMEANQ VAHVNCGSCR MLLMYQYGAT  120
SVKCAVCNFV TSIGASTSIT EQKFSN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015959245.11e-102PREDICTED: protein LOL1 isoform X2
RefseqXP_016174844.11e-102PREDICTED: protein LOL1 isoform X1
SwissprotQ93ZB13e-79LOL1_ARATH; Protein LOL1
TrEMBLN1NFU51e-102N1NFU5_ARADU; Putative LSD1 zinc finger domain protein
STRINGVIT_02s0012g00990.t018e-88(Vitis vinifera)