PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy022375
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 566aa    MW: 63104 Da    PI: 9.5622
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S58470220PU_refUnigeneView CDS
gnl|UG|Ahy#S54172483PU_unrefUnigeneView CDS
PUT-171a-Arachis_hypogaea-14906PU_unrefplantGDBView CDS
gnl|UG|Ahy#S54172335PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.7e-532643911128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeelvv+yLkkk+++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ ++++
  Ahy022375 264 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSgGTQK 362
                79****************************.88***************988899***************************************9977788 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kk Lvfy g+ p+g kt+W+mheyrl
  Ahy022375 363 VGVKKALVFYGGKPPRGIKTNWIMHEYRL 391
                ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-65254425IPR003441NAC domain
PROSITE profilePS5100562.033264425IPR003441NAC domain
PfamPF023658.7E-28265391IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MAHPSEPLGG SPPPSRCGAR FFQKIEXVDM TSAVELDGTL ELNDGRSIAL RESIVELLEG  60
LVVISDVSLM VLLVVNLHDL PAYSRLQCAV VVIQIRQRES VKSGECAAAC APSAVESRRS  120
TVARVFRVNR DRAAIAMDDS SVRWLLQFWK QMKVSISAPG RLESKGLEFK PFRFQQAVVS  180
TQSVHYGRGM QITRTKQHMT FRLNGSSSES TVARTNQPTT QIHKKEGELL KEEEEEKKKK  240
KKKSERSINM ESTDSSTGSQ QPNLPPGFRF HPTDEELVVH YLKKKAASAP LPVAIIAEVD  300
LYKFDPWELP AKATFGEQEW YFFSPRDRKY PNGARPNRAA TSGYWKATGT DKPVLTSGGT  360
QKVGVKKALV FYGGKPPRGI KTNWIMHEYR LADNKPNNRP PGCDLGNKKN SLRLDDWVLC  420
RIYKKNNTHR SPMEHEREDS MDDMIGGIPP SINVGQMNAR FHLSKMSTSF SNALLENDHH  480
HHQNLLEGMM LGGGNNNNNN VVPPNMLGLG SASNTINNNS NKAELSFVPT MTTSSNTMGL  540
SSLYWNEDDV AASNKRFNLE SGDHNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-7526342714170Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236242KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025614862.10.0NAC transcription factor 56
SwissprotQ9LD441e-114NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A371E5S20.0A0A371E5S2_MUCPR; NAC transcription factor 56
STRINGXP_007149615.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-115NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]