PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy022124
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 237aa    MW: 26559.2 Da    PI: 10.0705
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59521728PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.21.6e-5381441128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 
                lppGfrFhPtdeel+ +yL+kkv++ +l++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++     
  Ahy022124   8 LPPGFRFHPTDEELILHYLRKKVASIPLPV-SIIAEVDIYKLDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVVSpaatv 106
                79****************************.89***************988899***************************************9988888 PP

        NAM  96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++ vg+kk Lvfykgr pkg+kt+W+mheyrl
  Ahy022124 107 trrvgQESSVGVKKALVFYKGRPPKGVKTNWIMHEYRL 144
                887776677***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-655171IPR003441NAC domain
PROSITE profilePS5100561.2958171IPR003441NAC domain
PfamPF023654.0E-289144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGSPESNLPP GFRFHPTDEE LILHYLRKKV ASIPLPVSII AEVDIYKLDP WELPAKAAFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVV SPAATVTRRV GQESSVGVKK  120
ALVFYKGRPP KGVKTNWIMH EYRLVDNNRP IKLKDTSMRL DDWVLCRIYK KSKFSVSSPE  180
ESPSSEVQAA EENGLFKNTI LRSPIPTPSP SPPPPLPQSL LSQKSVSFSN LLDAMDX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-73717216166NO APICAL MERISTEM PROTEIN
1ut4_B3e-73717216166NO APICAL MERISTEM PROTEIN
1ut7_A3e-73717216166NO APICAL MERISTEM PROTEIN
1ut7_B3e-73717216166NO APICAL MERISTEM PROTEIN
3swm_A4e-73717219169NAC domain-containing protein 19
3swm_B4e-73717219169NAC domain-containing protein 19
3swm_C4e-73717219169NAC domain-containing protein 19
3swm_D4e-73717219169NAC domain-containing protein 19
3swp_A4e-73717219169NAC domain-containing protein 19
3swp_B4e-73717219169NAC domain-containing protein 19
3swp_C4e-73717219169NAC domain-containing protein 19
3swp_D4e-73717219169NAC domain-containing protein 19
4dul_A3e-73717216166NAC domain-containing protein 19
4dul_B3e-73717216166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025605787.11e-173NAC domain-containing protein 1
SwissprotQ84TD61e-95NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A445CT321e-172A0A445CT32_ARAHY; Uncharacterized protein
STRINGGLYMA16G04740.11e-126(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.13e-90NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]