PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy020065
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 394aa    MW: 44424.3 Da    PI: 6.3986
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59524590PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.46.5e-35201112101
                   HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   Fl k+y++++d+++++++sw+ +++nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++k+ll++i
     Ahy020065  20 FLLKTYDMVDDSATDDIVSWNsSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFHKIHPER---------WEFANDDFIKDQKHLLKNI 107
                   9********************8889*****************************************999.........******************* PP

                   XXXX CS
  HSF_DNA-bind  98 krkk 101
                   +r+k
     Ahy020065 108 HRRK 111
                   **98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-3616110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-5816110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3416110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.1E-182043IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.8E-3020110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-185971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-187284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MEGGAPQSTG GGAGGGPAPF LLKTYDMVDD SATDDIVSWN SSTNNSFVVW NPPEFARLLL  60
PTYFKHNNFS SFIRQLNTYG FHKIHPERWE FANDDFIKDQ KHLLKNIHRR KPIHSHSHPP  120
GSVVDPERAA FEEEIEKLNR EKSSIESNIF SFKQHQSTAK LHLEEFQQRL DGMEKRQKHL  180
LNIFEKALQN PTFVEQFSRK IESMDLSAYN KKRRLPQVDD MQPVVESSFV DNPNNFRMEF  240
GNVFHQDFSN KLRLELSPAV SDMNLVSRST QSSNEDGESP QKKISEGEQT GIQTRTSVPF  300
APGNIGAADT GASFTFKMDS CLSQRATNSE SPKLCTLEPS SEEGDSHISC QLTLASCPFK  360
VNRNSYSAKA SQIDSQEIGK LAEPRFHSNS KESD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-2011108129Heat shock factor protein 1
5d5v_B5e-2011108129Heat shock factor protein 1
5d5v_D5e-2011108129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016175574.10.0heat stress transcription factor A-5
RefseqXP_025674759.10.0heat stress transcription factor A-5
SwissprotQ94BZ51e-134HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A445AB170.0A0A445AB17_ARAHY; Uncharacterized protein
STRINGGLYMA05G28460.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-136HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]