PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy018843
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 171aa    MW: 19338.6 Da    PI: 10.1028
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59555490PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.23.8e-5481351128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeel+v+yLk+k+++ +l++  +i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++ +++ 
  Ahy018843   8 LPPGFRFHPTDEELIVHYLKRKASSAPLPV-AIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIIASdGQHR 106
                79****************************.88***************8888999*************************************99956677 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 g+kk Lvfy g+ pkg+kt+W+mheyrl
  Ahy018843 107 LGVKKALVFYGGKPPKGVKTNWIMHEYRL 135
                9**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-615145IPR003441NAC domain
PROSITE profilePS5100556.6148151IPR003441NAC domain
PfamPF023651.3E-289135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MDSCQPQLPP GFRFHPTDEE LIVHYLKRKA SSAPLPVAII ADVDLYKFDP WELPSKATFG  60
EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPIIA SDGQHRLGVK KALVFYGGKP  120
PKGVKTNWIM HEYRLTTTHN NNSISSKSFP SLPSNLPSSN QKKNSLRLDD X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-68514317153NAC domain-containing protein 19
3swm_B3e-68514317153NAC domain-containing protein 19
3swm_C3e-68514317153NAC domain-containing protein 19
3swm_D3e-68514317153NAC domain-containing protein 19
3swp_A3e-68514317153NAC domain-containing protein 19
3swp_B3e-68514317153NAC domain-containing protein 19
3swp_C3e-68514317153NAC domain-containing protein 19
3swp_D3e-68514317153NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025622047.11e-124NAC transcription factor 25
SwissprotA2YMR02e-83NAC10_ORYSI; NAC transcription factor ONAC010
SwissprotQ8GY424e-84NAC25_ARATH; NAC transcription factor 25
SwissprotQ9LD444e-84NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A444WYC81e-108A0A444WYC8_ARAHY; Uncharacterized protein
STRINGXP_004505006.15e-94(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-83NAC domain containing protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]