PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy017885
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TCP
Protein Properties Length: 347aa    MW: 38153.2 Da    PI: 8.4888
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59542789PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.92.7e-2842116375
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..ea 75 
                g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLlq+ k  i++l+ ++ ++  +    +
  Ahy017885  42 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLGQPSKVIDWLLQATKLDIDKLPPLQIPPGFAQfhHQ 116
                78*************************************************************777663333222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.1E-2443111IPR005333Transcription factor, TCP
PROSITE profilePS5136929.02243101IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSSSKSSYEA KQEDEGGGGT SSSRQWTAFR NPRIVRVSRS LGGKDRHSKV CTIRGLRDRR  60
IRLSVPTAIQ LYDLQDRLGL GQPSKVIDWL LQATKLDIDK LPPLQIPPGF AQFHHQQTLI  120
PLSHHHQFSL GGFYDANSTR FWDLDSSSIS LKGKESDTIT HPAGVISEKG KWIKTNQHVD  180
ENQDGLLLLN NAMGYNSPSG LTLSSSSSSS QFGSHALLFP SQQLLDPHSS NGVPQFSSSS  240
ATTPSTFTPY YAPFLANSSS STTTTMVENN SDALRQFNHI QILSSQVMPH PFIPSSSLFH  300
SINSNNNNND NNSAAATIRR IPMPFSSKLL DSDNNNNESN QEDHKGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1848102155Putative transcription factor PCF6
5zkt_B1e-1848102155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025629475.10.0transcription factor TCP5
RefseqXP_025629476.10.0transcription factor TCP5
RefseqXP_025629477.10.0transcription factor TCP5
TrEMBLA0A445AZ790.0A0A445AZ79_ARAHY; Uncharacterized protein
STRINGGLYMA04G32324.12e-94(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.17e-52TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5