PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy016660
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YA
Protein Properties Length: 136aa    MW: 15321 Da    PI: 10.2272
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S58470786PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.22.3e-324197158
  CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
               +ep++VNaKQy++Il+RRq+Rak+e+e+k  +++rkpylheSRh+hAlrR+Rg+gGrF
  Ahy016660 41 EEPVFVNAKQYHGILRRRQSRAKAESENKA-IRNRKPYLHESRHQHALRRARGCGGRF 97
               69****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.2E-3539100IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.69840100IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-274297IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.0E-244365IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068604565IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.0E-247497IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MFAPNDTQPY PPQPYGGHPM AHIQLMGTQQ AGVPLPANAI EEPVFVNAKQ YHGILRRRQS  60
RAKAESENKA IRNRKPYLHE SRHQHALRRA RGCGGRFLNS KKDENQQDEL SPADKSHSND  120
NHNPDKNNLA PSDRAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-2140105166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025694280.11e-96nuclear transcription factor Y subunit A-7 isoform X2
SwissprotQ84JP11e-49NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A444ZDS82e-94A0A444ZDS8_ARAHY; Uncharacterized protein
STRINGGLYMA15G13660.23e-77(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-48nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]