PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy012574
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 246aa    MW: 27936.4 Da    PI: 8.8641
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59523345PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.63.5e-51161401128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+evdi+k++PwdLp      e+e yfFs+r+ ky++g+r+nrat+sgyWkatg dk++ ++ +++l
  Ahy012574  16 LPPGFRFHPTDEELVVQYLKRKVFSCPLPA-SFIPEVDICKSDPWDLPGD---LEQERYFFSTREAKYPNGNRSNRATNSGYWKATGLDKHIATSkGHQL 111
                79****************************.89***************54...46799**********************************99856777 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                +g+kktLvfy+g+ p g++tdW+mheyrl
  Ahy012574 112 IGMKKTLVFYRGKPPYGSRTDWIMHEYRL 140
                ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-6112160IPR003441NAC domain
PROSITE profilePS5100557.89216160IPR003441NAC domain
PfamPF023651.3E-2717140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEGRGSSFVK NGELRLPPGF RFHPTDEELV VQYLKRKVFS CPLPASFIPE VDICKSDPWD  60
LPGDLEQERY FFSTREAKYP NGNRSNRATN SGYWKATGLD KHIATSKGHQ LIGMKKTLVF  120
YRGKPPYGSR TDWIMHEYRL VSHPHLLPMQ NWVLCRIFFK RRAPATAKNV LLDHNSHSAS  180
ASEEAFTISH EGSNSKVVFY DFLAQNRADL NRVTPPASST SGTSGITTES DEHEDSSSCN  240
NFPFFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-501316114166NO APICAL MERISTEM PROTEIN
1ut4_B1e-501316114166NO APICAL MERISTEM PROTEIN
1ut7_A1e-501316114166NO APICAL MERISTEM PROTEIN
1ut7_B1e-501316114166NO APICAL MERISTEM PROTEIN
3swm_A2e-501316117169NAC domain-containing protein 19
3swm_B2e-501316117169NAC domain-containing protein 19
3swm_C2e-501316117169NAC domain-containing protein 19
3swm_D2e-501316117169NAC domain-containing protein 19
3swp_A2e-501316117169NAC domain-containing protein 19
3swp_B2e-501316117169NAC domain-containing protein 19
3swp_C2e-501316117169NAC domain-containing protein 19
3swp_D2e-501316117169NAC domain-containing protein 19
4dul_A1e-501316114166NAC domain-containing protein 19
4dul_B1e-501316114166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016194832.10.0NAC domain-containing protein 83
RefseqXP_025650625.10.0NAC domain-containing protein 83-like
RefseqXP_025697362.10.0NAC domain-containing protein 83-like
SwissprotQ9FY931e-100NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A445D9S80.0A0A445D9S8_ARAHY; Uncharacterized protein
STRINGcassava4.1_014491m1e-117(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.18e-94NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]