PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy010288
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 391aa    MW: 44831.4 Da    PI: 4.6583
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59548838PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.13.2e-342932102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye+++d++++ ++sws++++sfvv+++ +fa+++Lp++Fkh+nf+SF+RQLn+YgFkkv+ e+         weF+++ F +g+ + +++i+
     Ahy010288   2 FLAKTYEMVDDPSTDPIVSWSASNRSFVVWNPPDFARDLLPRFFKHNNFSSFIRQLNTYGFKKVDPEQ---------WEFANDDFVRGQPHRMKNIH 89 
                   9********************999****************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     Ahy010288  90 RRKP 93 
                   *985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-57191IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.1E-36291IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-33291IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-30291IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-19225IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-194052IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404165IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
XFLAKTYEMV DDPSTDPIVS WSASNRSFVV WNPPDFARDL LPRFFKHNNF SSFIRQLNTY  60
GFKKVDPEQW EFANDDFVRG QPHRMKNIHR RKPVHSHSLQ NLQAQAPLTE SERMSLQDEI  120
ERLNREKEQL LMELQRHEQE WQEYEIRIHC SKDRVEKMEQ KHQKMISSVS SVLQKPGIDL  180
NQLALLETTD RKRRLPRNGY LSDETNIEDT TETEQMLPTE NSQDTSVLTI ITEQLDQLES  240
SMVFWETISN DISDTTIHIH SSLDFDESTS CADSLSISCP LLDIEVLPKS SGIDMNSEPA  300
SAPVSEPASA SKEQAAGTTP VVVGVNDVFW EQFLTENPGS SEAQEVQSER KYHDTSKGEG  360
KPSDPGKFWW NMRNTSNLPE QIGHVSQAEK T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2129129129Heat shock factor protein 1
5d5v_B2e-2129129129Heat shock factor protein 1
5d5v_D2e-2129129129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015958115.10.0heat stress transcription factor A-4c
RefseqXP_025691882.10.0heat stress transcription factor A-4c
SwissprotO494031e-114HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A444XBG10.0A0A444XBG1_ARAHY; Uncharacterized protein
STRINGGLYMA05G29470.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-109heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]