PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy009527
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 226aa    MW: 26039.1 Da    PI: 7.6377
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S58450823PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.52.5e-34481432102
                   HHHHHHHHHCTGGGTTTSEESSSS....SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkeliswseng....nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                   Fl+k+y++++d+ +++++sw ++g    +sfvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF++++F+kg k+ll
     Ahy009527  48 FLTKTYQLVDDPMTDHIVSWGHDGhstpSSFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANEYFRKGAKHLL 135
                   9********************998788899***************************************999.........**************** PP

                   XXXXXXXX CS
  HSF_DNA-bind  95 ekikrkks 102
                   ++i+r+k+
     Ahy009527 136 CEIHRRKT 143
                   ******96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-3640136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.7E-5544141IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-3145141IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-124871IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.2E-3048141IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434091115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-12103115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAFTLEERRS SNIEEEENTN KMKKMMMMMD SSSQKKLPSS SSSVPAPFLT KTYQLVDDPM  60
TDHIVSWGHD GHSTPSSFVV WRPPEFARDL LPNYFKHNNF SSFVRQLNTY GFKKVVADRW  120
EFANEYFRKG AKHLLCEIHR RKTPHHHHHH HHHHQENNNE ALCWIDSSTT PTTIPSIPTS  180
LLLPSPKSPS SSSLGGATNN SDHHQHNHIL AALSEDNQRL KEKELD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-213914312122Heat shock factor protein 1
5d5u_B1e-213914321131Heat shock factor protein 1
5d5v_B1e-213914321131Heat shock factor protein 1
5d5v_D1e-213914321131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015973391.11e-116heat stress transcription factor B-4b-like
RefseqXP_015973392.11e-116heat stress transcription factor B-4b-like
RefseqXP_025608825.11e-116heat stress transcription factor B-4b
SwissprotQ7XHZ06e-61HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLA0A445C4421e-114A0A445C442_ARAHY; Uncharacterized protein
STRINGXP_007146140.13e-72(Phaseolus vulgaris)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]