PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy007365
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family E2F/DP
Protein Properties Length: 439aa    MW: 48774.4 Da    PI: 4.9813
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59540014PU_refUnigeneView CDS
gnl|UG|Ahy#S58444232PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.61.8e-27120185171
    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                r+++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  Ahy007365 120 RYDSSLGLLTKKFINLIKQAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 185
                6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-29116187IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.2E-34120185IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.08E-17120183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.2E-24122185IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146603.90E-43196302No hitNo description
SuperFamilySSF1440744.18E-31199301No hitNo description
PfamPF164211.2E-30201300IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MKRQVPLPST KPPFAPPADY HRFATDHRTT SQNDADAIAV KTPQLKRKSV TTDLEGDSGN  60
VTPASTEAVN SPFRTPISRK TGKASKSSRL TKCNRSGSQI PGSNISSPSA NNLAPSGPCR  120
YDSSLGLLTK KFINLIKQAE DGILDLNKAA ETLEVQKRRI YDITNVLEGI GLIEKKLKNR  180
IQWKGLDVSR PGQAVDSFAS LQAEVENLTN EEHRLDEQIR EMQERLRGVS EDENTQRYLF  240
VTEEDIKSLP SSQNETLIAI KAPYCTTLEV PDPDEVVDYP QRKYRIVLRS TTGPIDVYLL  300
SQFEEKFEIN GVNVGPNIPS RPDFNKHQST VVSNDRGKDL EMGIQDVYRP SDLSNSHDFA  360
GGITKIVPSD FESDADYWLL SDADVSITDM WRTEPGEVEW HNLETPKEDY CMTHVSPPPP  420
QTPPSNISEA PSASNPPVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A9e-27115186274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016171961.10.0PREDICTED: transcription factor E2FB
SwissprotQ9FV711e-141E2FB_ARATH; Transcription factor E2FB
TrEMBLA0A151TNQ40.0A0A151TNQ4_CAJCA; Transcription factor E2F3
STRINGGLYMA11G18401.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-141E2F transcription factor 1