PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy005428
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TCP
Protein Properties Length: 190aa    MW: 21041 Da    PI: 10.0391
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-171a-Arachis_hypogaea-5618PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP92.49.6e-2947120374
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 
                g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLlq+ k  i++ + ++ ++  +    
  Ahy005428  47 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLGQPSKVIDWLLQATKLDIDKPPPLQIPPGFAQfhH 120
                78*************************************************************77766333322 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.74548106IPR017887Transcription factor TCP subgroup
PfamPF036349.5E-2648110IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSSSKSSYQA KQEDDGGGGG GGGGTSSSRQ WTAFRNPRIV RVSRSLGGKD RHSKVCTIRG  60
LRDRRIRLSV PTAIQLYDLQ DRLGLGQPSK VIDWLLQATK LDIDKPPPLQ IPPGFAQFHH  120
QQTLIPLSHH HQFSLGGFYD ANSSRFWDMD SSSISLKGKE SDTITHPAGV ISEKGKWIXT  180
NQHVDENQDX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1753107155Putative transcription factor PCF6
5zkt_B1e-1753107155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015943543.11e-136transcription factor TCP5
RefseqXP_015943551.11e-136transcription factor TCP5
RefseqXP_015943558.11e-136transcription factor TCP5
RefseqXP_015949865.11e-136transcription factor TCP5-like
RefseqXP_025617176.11e-136transcription factor TCP5
RefseqXP_025617182.11e-136transcription factor TCP5
SwissprotQ9FME31e-47TCP5_ARATH; Transcription factor TCP5
TrEMBLA0A445EJQ51e-134A0A445EJQ5_ARAHY; Uncharacterized protein
STRINGXP_004516160.15e-70(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.13e-50TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]