PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_022863-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family LBD
Protein Properties Length: 245aa    MW: 25606 Da    PI: 7.8501
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_022863-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.46.6e-40301301100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+ +C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l++e
  AHYPO_022863-RA  30 PCGACKFLRRKCVVGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQTE 123
                      7***********************9989****************************************************************** PP

           DUF260  94 lallkee 100
                      l++l+++
  AHYPO_022863-RA 124 LSYLQAH 130
                      **99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.71529131IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-3930128IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSISGNAGSS GGSGGSGGCG GGGGGGSGGP CGACKFLRRK CVVGCIFAPY FDSEQGAAHF  60
AAVHKVFGAS NVSKLLLHIP VHKRLDAVVT ICYEAQARLR DPVYGCVAHI FALQQQVVNL  120
QTELSYLQAH LATLEVPTPP PPPPQPLMQP LQLSIADLPS TSTVPATYDL SSLFDPVVQP  180
LWAMQQQQQQ QRGSMDQRSY GTSDRGPLGG GDLQAVAREL LHRHGSPNIG HMHHDPSSSS  240
SMSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-38261317111LOB family transfactor Ramosa2.1
5ly0_B7e-38261317111LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11526SGGCGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692269.11e-123PREDICTED: LOB domain-containing protein 18
SwissprotO813236e-78LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A0K9QPJ91e-117A0A0K9QPJ9_SPIOL; Uncharacterized protein
STRINGXP_010692269.11e-123(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.11e-77LBD family protein
Publications ? help Back to Top
  1. Rast-Somssich MI, et al.
    The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin.
    J. Exp. Bot., 2017. 68(11): p. 2741-2755
    [PMID:28472464]
  2. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]