PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021568-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 397aa    MW: 44242.9 Da    PI: 7.6868
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021568-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25.2e-07175195526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ fa+ GtC++Gd+C+ +Hg
  AHYPO_021568-RA 175 ICS-FAAAGTCPRGDKCPHIHG 195
                      577.**************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.9776695IPR000571Zinc finger, CCCH-type
SMARTSM00356426794IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.793170197IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017171196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4176195IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.72E-13227302No hitNo description
Gene3DG3DSA:3.30.40.104.7E-10232297IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001625.67E-5238297No hitNo description
PROSITE profilePS5008912.179239296IPR001841Zinc finger, RING-type
SMARTSM001843.1E-7239295IPR001841Zinc finger, RING-type
PfamPF000973.8E-7239295IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180262271IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010314.314325354IPR000571Zinc finger, CCCH-type
SMARTSM003560.0078325353IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
QRHFTKLTRF FSFVFYQINS HFSASPLHFL TFIQSSFKTL TTEPDAASHL HSSPSGDDST  60
QAVTERPTEP AAASHQNHRG ACAYGSRCRY DHLKISKVQS SGSSSSINFS ETKTPGVTIS  120
GIATGSSVQP ELSPVSRECL LSSKAAWNQQ PGNPGYVEDD FVPHPRSDRL ADQIICSFAA  180
AGTCPRGDKC PHIHGDLCPT CGKHCLHPYR LKEREEHSQT CEKMQKHLEA LKQSQEIECS  240
VCLERVLTKP VGERKFGLLS ECDHPFCISC IRGWRNSSPS SGMDVNSTLR ACPICRKLSY  300
FVIPSVIWYF SNEEKEEIVE SYKAKLKSID CKYFEFGNGS CPFGTSCFYK HSYRDGSVEE  360
VVLRHLGAAD GETACRLPQK FAYKLNLDWF ACILYT*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695330.11e-175PREDICTED: E3 ubiquitin-protein ligase makorin
SwissprotQ5ZA071e-119C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A0K9QYM61e-169A0A0K9QYM6_SPIOL; Uncharacterized protein
STRINGXP_010695330.11e-174(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-118C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]