PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021418-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 82aa    MW: 9245.44 Da    PI: 5.5483
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021418-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.0002432632054
                     HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     f +L ++l +    ++ K +K +iL  A++ +++L
  AHYPO_021418-RA 32 FLNLSSVLEPE---RAAKTDKLAILSDAIRVVNQL 63
                     66788888888...9****************9999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-53178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-44179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MGSFDDSAWD LPLNYFIDDV ASPNFSWVHP SFLNLSSVLE PERAAKTDKL AILSDAIRVV  60
NQLRHEAAEL KRMNFGMRNQ H*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23210.19e-14bHLH family protein