PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021390-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family LBD
Protein Properties Length: 122aa    MW: 13391 Da    PI: 7.8125
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021390-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260109.23e-3426115189
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C aCk+ rrkC ++Cv+apyf +eq +++f++vhk+FGasnv++ll+++p ++r da+ sl+yeA  r+rdPv G+v+ i++lq ql+ 
  AHYPO_021390-RA  26 PCGACKYRRRKCDEGCVFAPYFDSEQgTAQFEAVHKVFGASNVSRLLHSIPVHRRLDAVVSLCYEALSRVRDPVFGCVADITTLQLQLML 115
                      7***********************9989*********************************************************99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.51625121IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-3426114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MSNNNNNNNN NEWQGEGGNN NNGGGPCGAC KYRRRKCDEG CVFAPYFDSE QGTAQFEAVH  60
KVFGASNVSR LLHSIPVHRR LDAVVSLCYE ALSRVRDPVF GCVADITTLQ LQLMLHIKNY  120
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3419113497LOB family transfactor Ramosa2.1
5ly0_B3e-3419113497LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692268.18e-51PREDICTED: LOB domain-containing protein 19
SwissprotO813222e-42LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A438IWC33e-48A0A438IWC3_VITVI; LOB domain-containing protein 31
STRINGXP_010692268.13e-50(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.12e-41LBD family protein