PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020780-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family LBD
Protein Properties Length: 232aa    MW: 25561.1 Da    PI: 6.6345
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020780-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260109.72.2e-34799192
           DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92
                     +C aCk+lrrkC+k+Cv+apyf++eq + +fa++hk+FGasnv+kll +lp ++r++a+ ++ yeA+ar++dP+yG+v  +++    l+ql+a
  AHYPO_020780-RA  7 PCGACKFLRRKCVKGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLGHLPVNDRSEAAITISYEAQARLQDPIYGCVVNLQAQLVALKQLQA 99
                     7*************************89**************************************************999998888888886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.7126108IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-327100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCVK GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLGHLPVND  60
RSEAAITISY EAQARLQDPI YGCVVNLQAQ LVALKQLQAA HQGIISGNNS TQNPNYERSC  120
SNYPQDVQSW LQSEYSQMVP PFESNYFNCS SQSSTIYGSN QSNHHGFDVN YDRINSMALQ  180
DDQDVSFASF DGSSSHHSTS LASRDFENKS KWPYHDTDDL HSVAFGYPQH S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3331057112LOB family transfactor Ramosa2.1
5ly0_B3e-3331057112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021770209.11e-120LOB domain-containing protein 29-like
SwissprotQ9SLB61e-55LBD17_ARATH; LOB domain-containing protein 17
TrEMBLA0A2N9HGQ93e-78A0A2N9HGQ9_FAGSY; Uncharacterized protein
STRINGXP_010679217.11e-115(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.16e-52LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]