PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020654-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 222aa    MW: 24463.7 Da    PI: 11.6469
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020654-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.000191581852355
                      HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  23 LrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      L +l+P +     +Kls +  Le+A++YI  Lq
  AHYPO_020654-RA 158 LGRLVPGC-----RKLSLSNLLEEATDYIAALQ 185
                      55666666.....8****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.204135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-7145202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-6152193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDSTISTYEE HTEEDTSREL SMRKKRRRID LTVNQNQSNN NQSQIRWRSQ AEQKSYSSKL  60
LNALRQVRRR NPTPAPVSGS RAVRDAADKA LAIAAKGRTR WSRAILANRL KLRLKNHKKA  120
KVRSRSPPQL PVTGNSRLFG ENNQQQKLTA LDKRVKVLGR LVPGCRKLSL SNLLEEATDY  180
IAALQMQVGT MAALTELLTG SNSGSSSGSS SGSMETNSSG S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12428KRRRI
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor probably unable to bind DNA. Negatively regulates brassinosteroid signaling. {ECO:0000269|PubMed:20023194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674630.13e-88PREDICTED: transcription factor bHLH149
SwissprotO804822e-34BH149_ARATH; Transcription factor bHLH149
TrEMBLA0A0K9RCQ02e-85A0A0K9RCQ0_SPIOL; Uncharacterized protein
STRINGXP_010674630.11e-87(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06590.22e-16bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]