PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020436-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 209aa    MW: 23308.4 Da    PI: 5.3642
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020436-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.000265981854
                     HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     ++f+eL e+l      + +Kl+K+ iL+ A++ +k L
  AHYPO_020436-RA 65 KRFFELSEVLERG---TTPKLDKVGILTDAIRTVKLL 98
                     5899999999998...99*************988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-664117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-665115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.10.287.5101.7E-4116150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MESLIGEELD LNWVCCLLDG DSSPYCESFR CPSPLVNPFP TSISHSVSTQ DSSAHLDENE  60
ENDRKRFFEL SEVLERGTTP KLDKVGILTD AIRTVKLLRE ETSSLTCQNT ELKQKITDLK  120
AEKTELRAEK RRLKSEKEET EKRIKALGSH SSLQLHPSSG PNSYAIPCQA VGGKLMPLVN  180
YTNVPMWQFV PQAAFDISQD HVLHPPVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866561.19e-82transcription factor ILR3-like
TrEMBLA0A0K9R0D72e-80A0A0K9R0D7_SPIOL; Uncharacterized protein
STRINGXP_008224874.11e-47(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.17e-43bHLH family protein