PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020351-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 253aa    MW: 27444.7 Da    PI: 6.7465
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020351-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH292e-092032441055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + RR ri  ++ +L+el+P+     +k  s a++L +Av++Ik Lq
  AHYPO_020351-RA 203 QERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVDHIKGLQ 244
                      68******************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.449193243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-7198249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-7203244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-10203248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-8205248No hitNo description
Gene3DG3DSA:4.10.280.101.1E-8206248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MYSSSSSSSQ QQSSSNNQTN PNLIRYDSAP NTHLSNTVDS VVGLGHPHHQ FFSESTQSKL  60
SSTRGDSSNN NNNNNTLSLL HQGTYGMDTN TTSSGLIRHS SSPAGLLTHL ASDLGYTGSK  120
GFDVNYNGQG SSNMISRLGS QLSFTRKDHH SLSQISEVNE SIMFGNNESK RSSGFSLSAW  180
DDTNDNSFVI SSSSTTLNPL DPQERRTRIS GKLKKLQELV PNMDKQTSYA DMLDLAVDHI  240
KGLQNHIEPQ PS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666766.17e-94PREDICTED: transcription factor bHLH128
TrEMBLA0A0J8B3U22e-92A0A0J8B3U2_BETVU; Uncharacterized protein
STRINGXP_010666766.13e-93(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.14e-29bHLH family protein