PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019920-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 350aa    MW: 38848.8 Da    PI: 6.4178
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019920-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.3e-053103293655
                      S-STCHHHHHHHHHHHHHHH CS
              HLH  36 kKlsKaeiLekAveYIksLq 55 
                      +  + a++L +AveYIk+Lq
  AHYPO_019920-RA 310 RQTNTADMLDLAVEYIKDLQ 329
                      44899**************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.81E-4304333No hitNo description
Gene3DG3DSA:4.10.280.107.3E-7308342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-5309341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDSDFQQHQY QHHFHDFPHQ KQQSTGLTRF RSAPSSYFSS FLDGSSDSIT STDQRRDFSN  60
ARPLSPETET IFARFMASID AENTNSSQKL CNIPENSAVQ TDFAVKVKQE SDIQQQPMMY  120
HSQSKPPLAN QRNSGVKSSM GIQSIPQMKT GFGGGINTNS SSSLARFGVM GGTGNYGGNT  180
QMNFSSGLPS STSELLNQNP NVGSERIFSN STNNDTNYPF PMNSWDDTTV SDNFEDKKPL  240
FCNPNSSENQ SGEAKNCPPV LSHHLSLPKT LPDLSNIENI ENFLQNQDIV TCRIRAKRGC  300
ATHPRSIAER QTNTADMLDL AVEYIKDLQK QVETMIDNRA KCICQKEKT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021772031.11e-135transcription factor bHLH130-like
TrEMBLA0A0K9S2437e-98A0A0K9S243_SPIOL; Uncharacterized protein
STRINGXP_010673593.11e-111(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-34bHLH family protein