PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019632-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 233aa    MW: 26343.4 Da    PI: 5.4726
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019632-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.3e-1091142154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      +r  h e Er RR+++ + f+ Lr+ lP  +    ++K s ++ +++A++YI++L
  AHYPO_019632-RA  91 KRILHREYERLRRQEMANLFNSLRQTLPVeL---IQGKRSISDDVREAINYIQDL 142
                      6889*************************78...*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.78E-688147No hitNo description
SuperFamilySSF474599.81E-1489162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.05290142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-891142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-992162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.008896148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MFPFQRSCEL SFKISDEGDQ NNEPTNLEDQ IMLENNLFLG FNNNISNVSI NPERGRGRGR  60
GRGRGRRSSS SLAGSSSSTN NTIANNDEVE KRILHREYER LRRQEMANLF NSLRQTLPVE  120
LIQGKRSISD DVREAINYIQ DLKKNVKELE EKRDELRKSV ESPSSSSGND GGLRDQSCVV  180
IRQSVVGLEI EISVGFEHQQ FLLSTALQII VDEGLEVVTC TSTKFNDKLL HIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15564RGRGRGRGRG
25565RGRGRGRGRGR
390102KRILHREYERLRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693645.13e-78PREDICTED: transcription factor bHLH118-like
TrEMBLA0A0J8BC343e-78A0A0J8BC34_BETVU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.12e-23bHLH family protein