PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019438-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 344aa    MW: 38621.8 Da    PI: 5.0362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019438-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11177220654
                      HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  AHYPO_019438-RA 177 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 220
                      589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.453171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-16174241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9177220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-12177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-15178236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-4178224No hitNo description
CDDcd048730.00427269332No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEMNDDGFLE ELLALRRDQS WETNPSPTHH DQINGFFSSP SWPTFNGLDS TTLLPPTTTP  60
TTTTLDCSSF FVHPSTTPFD PTFPDPGPGP GPNPEHEYSI SMIEAHEQDH MNNNNMIPCK  120
AEHSMTSGEV ELEMEIPPAL SPPAAFNIGV CMMENKRSCN KMSSKVKRVE GQPSKNLMAE  180
RRRRKRLNDR LSMLRSVVPK ISKMDRTSIL GDTIDYMKEL LERINSLQEE VDTSPHHFNV  240
MTMFNDDKPT DVLVRNSPKF DVDRRKMDTR VEICCAGKPG LLLSTITTLE AMGLEIQQCV  300
ISCFNDFSLQ ANCSEEMEHK ALISSEDIKQ ALFRNAGYGG RCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179186ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021722527.11e-154transcription factor bHLH61-like
SwissprotQ9LSL12e-81BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0K9R7351e-144A0A0K9R735_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010692682.11e-141(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-83beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]