PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019266-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 348aa    MW: 38533.9 Da    PI: 6.1147
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019266-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.5e-06136156526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+ f++ G Ck Gd C FaHg
  AHYPO_019266-RA 136 ACSEFRK-GGCKKGDCCEFAHG 156
                      7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0067131157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.272131158IPR000571Zinc finger, CCCH-type
SMARTSM0035637166189IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.268166190IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MMIGETHRNH QIHVPPWEES FNQNTQINSP TFSSPLYSNG DGFSPNSTSY YDAVLASLRR  60
YLVSDTGENE SPTKEELPGD FDFVAEDYDD DFFMYDFKVR KCNRARAHDW TECPFAHPGE  120
KARRRDPRKF NYSGTACSEF RKGGCKKGDC CEFAHGVFEC WLHPARFRTQ ACKDGPGCKR  180
RVCFFAHTPD QLRPMPGLGS PRGTTGGYFS GSEEATMGSG SPTVEELVAS LRNLQLNKVK  240
SMPSSWVSGS PVFGSPRGVG GPAMNRAGFF SLPTTPTGPR VGYWDKKEFG DEEDEPIMER  300
VESGRVLRAR MFEKLSKENP LDGSGSPLSV SVPGPGPDFG WVSDLIE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021723483.10.0zinc finger CCCH domain-containing protein 23-like
SwissprotO821991e-95C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A0K9RHJ21e-172A0A0K9RHJ2_SPIOL; Uncharacterized protein
STRINGXP_010688398.11e-169(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-89C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]