PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018973-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 652aa    MW: 70877.4 Da    PI: 5.3391
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018973-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12467512454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  AHYPO_018973-RA 467 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 512
                      799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.6E-5135223IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39463512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.68E-15466517No hitNo description
SuperFamilySSF474591.44E-18466536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-18467533IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-10467512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-17469518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MMNPWSSDDI HGSSSLSIMD TLIPSNTTST SQDTLHTRLQ ALIDTPVTSR GETWTYAIFW  60
QYSVDYSGQA LLGWGDGYYR GEENKTRKDN PGSNRVSQDL AEQEHRKRVL RELNSLISGS  120
PANEDSAVEE EVTDTEWFFL ISMTHSFASG EDLPGQAHLS AAPIWAAGSD RLSTSPCNRA  180
KQGSCFGLQT MVSIPVLNGV LELGSTDVIF QCPDLMNKVR VLFCFGSGPG DPSAWSVPVS  240
VPAPLPEPAP ALSVDSDPTA MWINDPNPPE VVKEIRNTPT PPPPPPPQQP QLKVINLDNP  300
IKNNNPVEIQ NSQQKPGFFT RELNFSEYAG LNGSGSKSNG GLKPESGEIL SFGGGDSKRS  360
STTNSNGNVG IFGSNSQFII DDSSNKKKRS PNSRSSNDEG IMSFTSGVIM ASSGIGKSSN  420
NGGADSEHSD LEASVKEVDS CILVAEPEKR PRKRGRKPAN GREEPLNHVE AERQRREKLN  480
QRFYALRAVV PNVSKMDKAS LLGDAISYIN ELKAKLQDFS SEKEGLVAQV EGLKRELATK  540
NGLTSQPPPP PPPTNLENDL KVLGGQTLVD LDIDVKIIGW EAMIRVNCNK KNHPAARLMA  600
ALKELDLDVS HASVSVVNEL MIQQATVKMG NRYYSQDQLR MILASKISDP R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-60322256194Transcription factor MYC3
4rqw_B2e-60322256194Transcription factor MYC3
4rs9_A2e-60322256194Transcription factor MYC3
4yz6_A2e-60322256194Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1448456KRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677236.10.0PREDICTED: transcription factor MYC2-like
SwissprotQ336P51e-178MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A0J8CHW20.0A0A0J8CHW2_BETVU; Uncharacterized protein
STRINGVIT_02s0012g01320.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-154bHLH family protein