PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017909-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family LBD
Protein Properties Length: 205aa    MW: 22213.7 Da    PI: 7.4083
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017909-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.71.8e-283103196
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C++lr++C++ C+l+ ++      ++q++++ +v+k+FG++ ++++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg+++++++++++
  AHYPO_017909-RA   3 SCNGCRILRKGCSEACILRACIewiqsGEAQANATLFVAKFFGRADLMSFISAVPNHQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHICE 96 
                      6*********************9988777889************************************************************** PP

           DUF260  90 lkaelal 96 
                      ++++++l
  AHYPO_017909-RA  97 AAVDTVL 103
                      9998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.2862108IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-243101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MMSCNGCRIL RKGCSEACIL RACIEWIQSG EAQANATLFV AKFFGRADLM SFISAVPNHQ  60
RPALFQSLLF EACGRTVNPV NGAVGLLSSG NWHICEAAVD TVLRGGILRP IPPQLLPRAA  120
APPPPVVHSD TLLFHNVYGI PYQLLHQPMR LLNYDVIEEG PHRMRETTPL GSEASAITIN  180
CGENDRDALG GGIGQERKLL NLFI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092590.12e-68LOB domain-containing protein 39
SwissprotQ9FN113e-62LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A2P5BZQ44e-70A0A2P5BZQ4_PARAD; Lateral organ boundaries domain containing protein
STRINGXP_010092590.17e-68(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.15e-60LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]