PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017287-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 391aa    MW: 43742.2 Da    PI: 9.8062
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017287-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.3e-06146169123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++Cp Cg++F  +s+L++H+   H
  AHYPO_017287-RA 146 FPCPTCGEVFLKQSLLETHQTIkH 169
                      89******************8877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.18146174IPR007087Zinc finger, C2H2
PROSITE patternPS000280148169IPR007087Zinc finger, C2H2
SuperFamilySSF563995.28E-18171219No hitNo description
Gene3DG3DSA:3.90.228.107.7E-4188296IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563995.28E-18247389No hitNo description
Gene3DG3DSA:3.90.228.106.0E-4326389IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MAKTLTSHLN KLFFSLLLLL LHVGCFIFSS SYYNKNNYDL NLPTKKRKSS NNLSPKKAFS  60
SSWSFIKRVF SPSYKRTTTQ TRPPTPTNTA TTTSFSSPRS SQHSIVVPIR ESELRTPPRK  120
RRTGSRSEFD SSLYENPFFP LRNDIFPCPT CGEVFLKQSL LETHQTIKHA VSELRDGDSG  180
KNIVWIIFNT GWNNIKVDKP INIHRILKIH HSQKMLAKFE EFREGVKSKA ARAVSRAVDT  240
AAIRRDERCI ADGNELLRFH CTTFLCNLGQ NGNSALCNQV YCSACGIIRA GFSPKLDGIS  300
TFATSSRAHD AIPDDVEAEF AFMNVKRAML VCRVIAGRVG CDVMVVDKED PGFDSLVGRN  360
VAGPGRMDDE ELLVFNPRAV LPCFVIVYSV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021720713.10.0uncharacterized protein LOC110688290
TrEMBLA0A0K9RQ761e-180A0A0K9RQ76_SPIOL; Uncharacterized protein
STRINGXP_010685594.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-100C2H2 family protein