PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016575-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 501aa    MW: 55562.3 Da    PI: 7.3615
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016575-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26e-13355401455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  AHYPO_016575-RA 355 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITDLQ 401
                      799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-4447232IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474597.59E-19350417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.085351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.99E-14354405No hitNo description
Gene3DG3DSA:4.10.280.101.3E-18355414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10355401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-15357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MGVNCEVNKE DKAMLESVVG IEACKFLMSR NNEDFVNEFS PISKLNLQQG LCKIVDSCSW  60
NYAIFWQIVS SKKDGRSILI WGDGHCRDPK EILAMERGDC GESNGGTSKK DEAKKKVLEK  120
LHACFGGSKE DSFVATLDRV SDVEMLYLTS MYYWFWLDSP VGPARCFTSG RPIWVSDGKS  180
CSNHYQTRAH LADCGRIQTV VFVPVNSGVL ELGSIRMVLE EQNVVQMAKH IFGEPHPFQA  240
KMCPKIFGCE LSLGAPISHS NNINDTPKLE DGAGFSAESH VGARAAHTYG SSSNGFCSVD  300
NGKKLIPEIN FGGLIPETQN PTLEQAKEEH LVQGSQPKPR KRGRKPANGR EEPLNHVEAE  360
RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAISYITDL QMKVRMLEAE KELANPMHKN  420
IAIPEIDFQA RQGDALVHVS FPLDLHPASR VVKTLRENQI VAPEAIVSTT DNKIVHTFTI  480
RTQSGHAENL KEKLQAALSN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A3e-14472329192Transcription factor MYC3
4rs9_A3e-14472329192Transcription factor MYC3
4rqw_B3e-14472329192Transcription factor MYC3
4rqw_A3e-14472329192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679205.10.0PREDICTED: transcription factor bHLH3-like
TrEMBLA0A0J8C9S00.0A0A0J8C9S0_BETVU; Uncharacterized protein
STRINGGLYMA13G18131.11e-172(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-142bHLH family protein