PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016574-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 500aa    MW: 55469.6 Da    PI: 6.967
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016574-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.9e-13353400355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      r+h  +Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  AHYPO_016574-RA 353 RSHVLAERQRREKLNQRFYALRAVVPNiS------KMDKASLLLDAISYINDLQ 400
                      6899***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.6E-4648227IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.098350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-18352420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.30E-14353404No hitNo description
PfamPF000101.5E-10353400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-19354419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-15356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MGHNHMLTEE EKGLVEAVVG KDAYNFLMST ASDDSLSEFN PPGDILNLQN GLCQIVDGSS  60
WNYAIFWQIA SSKNGRAVLI WGDGHCRDPR TMVLDGGNGK LGTSKDEAKK RVLEKLHACF  120
GGSEEDNFAS TLDKVSDIEM LYLTSMYYWF RLDSSLGPAK SFVSGRSIWV SDVRSCLDHY  180
QSRAHLAKSA MFQTVVFVPV KTGVLELGSV RTVMEEPTLV QMVKTVFGES HSTQDKVSSK  240
VFGRDLSLST SRPRSMNISF APKKEDDASF SAESGVGGSD MGAKRVYGSS SNGKHSEPSD  300
KKLFSEINFG GSNPDNDFPG LDEASEELLL HAAELRARKR PTRRPVIGRE EARSHVLAER  360
QRREKLNQRF YALRAVVPNI SKMDKASLLL DAISYINDLQ TKISKLEAEK EKANSKQDQF  420
PIPEIDFHTR KDDALVHVTF PLDVHPVSKV VRTLREHQHV ALEANISTTE DKMIHTFTIR  480
AQAGEAEKLK EKVEAALSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-165822721192Transcription factor MYC3
4rqw_B8e-165822721192Transcription factor MYC3
4rs9_A8e-165822721192Transcription factor MYC3
4yz6_A8e-165822721192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679204.10.0PREDICTED: transcription factor bHLH3-like
TrEMBLA0A0J8F3J60.0A0A0J8F3J6_BETVU; Uncharacterized protein
STRINGPOPTR_0002s04310.11e-168(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-140bHLH family protein