PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016315-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 452aa    MW: 49155.5 Da    PI: 6.1286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016315-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.5e-063403781154
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  AHYPO_016315-RA 340 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 378
                      5778999**********998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.449329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-11339391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.02E-7339383No hitNo description
SMARTSM003530.0037340384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-9343385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MAEEYCGATN WWDSTPSNRS RFDGGGSGGG GGGGSSTTSS TTTLTNSGGG PGFGWLTDGS  60
TPVDTKMDST SLQLVGLGLS SQAMAEWNQE PTALLSMLQE GMGLNTNFQQ DATGGGLMFG  120
SNNNNNNNNN NNNNNNNNNN SSQISQRREK LFEGNEDLSP EFKQMGRGFS LDSQQPQFSP  180
SGSSIESTIT CQGLAPPSGF QHDSSSTSSV FGSPSSILQG LMGCPDQQHQ QQQQQVNSNF  240
QHNYFGNEQH HHQAQLSPSW AKVPQFLRAT SPKQQQQQQQ EQHHLQFINN AAYWSGSASL  300
METTMELRDT NSMVKKSNSE NNTKRTRNDG ASSTLPPFKV RKEKMGDRIT ALQQLVSPFG  360
KTDTASVLSE AIEYIKFLHE QVSVLSSPYL KSGGSYQQHQ QSNEKAKMDP DSPKQDLRSR  420
GLCLVPVSST FPVTHETTVD FWTPTFGGTF R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021725985.10.0transcription factor bHLH123-like isoform X2
TrEMBLA0A0K9RS620.0A0A0K9RS62_SPIOL; Uncharacterized protein
STRINGXP_010694302.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.14e-57bHLH family protein