PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016011-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 322aa    MW: 35905.4 Da    PI: 6.8012
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016011-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26.1e-08215255954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  AHYPO_016011-RA 215 ARQRRERISERLRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 255
                      69******************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.218206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-13212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-11212260No hitNo description
SuperFamilySSF474597.46E-14212264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-12214264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-5215255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MMNNPLSGLI IPNNNITQSQ PLNPSSSANS LDQQSLECLL SGTNSINTDN ASVEDNDDGI  60
SMLFSNPKNN NFLNFSSNND NNNNNNNNNN NNNNNNNNNN NNNNNNNXDN NNNNNNNNNN  120
NNNNNNNNNN NNNNNNNYPP FSINTNTNSS SNISFQQGSS SGSSVDEPDA EAIQQMKEMI  180
YRAAAFRPVN FGVEIVEKPK RKNVRISSDP QTVAARQRRE RISERLRVLQ KLVPGGSKMD  240
TASMLDEAAN YLKFLRNQVK ALEALGNNKF DHFQFSPNST TNHVFNPINL QFSSLPYHPM  300
QPTLTTQFSL QNPNNQKLKN F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215220RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690114.11e-120PREDICTED: transcription factor bHLH87
RefseqXP_019107448.11e-120PREDICTED: transcription factor bHLH87
SwissprotQ8S3D22e-70BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A0J8BKZ91e-120A0A0J8BKZ9_BETVU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.16e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]