PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015986-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 513aa    MW: 55558.4 Da    PI: 6.2011
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015986-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.3e-09339387355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  AHYPO_015986-RA 339 NSHSLAERVRREKISERMKFLQDLVPGC----SKATGKAVMLDEIINYVQSLQ 387
                      58*************************9....7779****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.06E-11334391No hitNo description
SuperFamilySSF474593.93E-17334405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.504336386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-17337404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-6339387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-10342392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MNMNDKDKLE LEKRNEEPLG YHPISLSADW RYDIPNFAKS SMGLVSSGNC MAVCGDAVGP  60
SCSSGSMVDS FGPKVWEHSV NTAPLGFSEM DVHNGPSVSD PLLMLKGGPF LPSMAGMVHH  120
SLSQFSTDSA FIERAARFSS FSGGNFADIL NPLGIHQSCN PYTRGEVMMQ GMQEVLSGNT  180
FKTLSGRLPH KSEACLADTS KDVSLPPERG AVELQKIDTA VERSNDEAKQ GVSMSGNDSD  240
EPEFSGGLAQ DEGVPLTVKD AKKRKRVNQV MEAEQANVNQ QQIGEAGKNN PEIQQKGQQN  300
STGAGNKPNG KHGKQGSPAS DSPKEEYIHV RARRGQATNS HSLAERVRRE KISERMKFLQ  360
DLVPGCSKAT GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPRLDFNIER LLAKDQMFSA  420
RPGQSGLAFS SDISLPYPPL HSTQPPILPP GIPAVGNSSD ALQRVISSQI PNMGAYKEHA  480
LQLPNVWDGE LHNVVQMGFN ANAPLDNQET NC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681178.10.0PREDICTED: transcription factor bHLH49 isoform X2
TrEMBLA0A0J8C5C90.0A0A0J8C5C9_BETVU; Uncharacterized protein
STRINGPOPTR_0010s14600.11e-179(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-101bHLH family protein