PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015818-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 165aa    MW: 18652.6 Da    PI: 10.6602
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015818-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.6e-0658941152
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
              HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52
                     +R +++ ++++ L+el+ +      +K + a++L++A+ YIk
  AHYPO_015818-RA 58 KRSQKLSDKISALQELVSPY-----GKTDTASVLQEACIYIK 94
                     6999**************99.....9***************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.2744796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-949113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-758119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
TIKDVRKCVN GVRLAQRHNN VLSNVSSIDA SKSSNKRKVI EQIVDNARKF KTMDAPLKRS  60
QKLSDKISAL QELVSPYGKT DTASVLQEAC IYIKIIHQEI RRLSISYLEV RTLQSRLQGD  120
IDRQIDLQSR GLCLVPVSIM KSITRENWVD HHPMSRANTR SSII*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669841.11e-79PREDICTED: transcription factor bHLH111 isoform X1
SwissprotQ8GXT34e-22BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A2H5NYP85e-30A0A2H5NYP8_CITUN; Uncharacterized protein (Fragment)
STRINGXP_010669841.14e-79(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-24bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]