PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015818-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 165aa    MW: 18652.6 Da    PI: 10.6602
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015818-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.6e-0658941152
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
              HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52
                     +R +++ ++++ L+el+ +      +K + a++L++A+ YIk
  AHYPO_015818-RA 58 KRSQKLSDKISALQELVSPY-----GKTDTASVLQEACIYIK 94
                     6999**************99.....9***************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.2744796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-949113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-758119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
TIKDVRKCVN GVRLAQRHNN VLSNVSSIDA SKSSNKRKVI EQIVDNARKF KTMDAPLKRS  60
QKLSDKISAL QELVSPYGKT DTASVLQEAC IYIKIIHQEI RRLSISYLEV RTLQSRLQGD  120
IDRQIDLQSR GLCLVPVSIM KSITRENWVD HHPMSRANTR SSII*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669841.15e-80PREDICTED: transcription factor bHLH111-like isoform X1
SwissprotQ8GXT33e-23BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A0J8CVB35e-80A0A0J8CVB3_BETVU; Uncharacterized protein
STRINGVIT_13s0019g00540.t012e-30(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-24bHLH family protein