PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015570-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 140aa    MW: 16115.8 Da    PI: 11.0601
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015570-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-084080954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      r RR+ri ++f  L++l+P        K++ a++L +A++Y+k L
  AHYPO_015570-RA 40 ARHRRERISEKFRILQRLVPGG-----IKMDTASMLDEAIRYVKFL 80
                     699*****************96.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.6593180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-133792IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-83785No hitNo description
SMARTSM003531.3E-123786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-1440105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-64080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MKEMMYRIAV MQPVDMDPNT IRKPKRRNVR ISNDPQSVAA RHRRERISEK FRILQRLVPG  60
GIKMDTASML DEAIRYVKFL KRQIRQLQNG SSMDHQHLQP PVSSFVGPDW PLPPPISSPG  120
SSKVMLSKDN YHQHEGIIF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015955870.12e-52PREDICTED: transcription factor HEC3-like
SwissprotO813137e-44IND_ARATH; Transcription factor IND
TrEMBLA0A0K9RSP84e-56A0A0K9RSP8_SPIOL; Uncharacterized protein
STRINGVIT_04s0044g01040.t011e-51(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.11e-45bHLH family protein