PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013589-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 648aa    MW: 71439.4 Da    PI: 7.612
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013589-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72e-13476522455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  AHYPO_013589-RA 476 NHVEAERQRREKLNQRFCALRAVVPNiS------KMDKASLLGDAISYITELQ 522
                      799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-4948235IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.761472521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-18475535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.74E-14475526No hitNo description
PfamPF000106.9E-11476522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-17476537IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-15478527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MGGGLVWNEE DKAMIASILG TKAFEYLISS PFTAETSLVS IENNENIQIK LCDLVERPNA  60
SNFSWNYGFF WQVSRAKSGE MVLSWGDGYC REPREGEESE ATRLLNFRLE DEAQQKIRKR  120
VLQKLNTLFG GSDDDNLACR LDRVTDMEMF FLVSMYFSFP RGEGGPGKCF ASGKHVWESD  180
LLRSKLDYCV RSFLAKSAGI QTVILIPTEF GVVELGSVRA IKEHQDVLKA LKFAFTSPTV  240
IRPKPTPSLP VVIHKIEDND PVPLPLTIPA SGSVPRPALA PAHAPIASTV AARAPVTSTL  300
PTPAPAPGRG VDNATKIFGQ NLNTAVRPPF REKLAVKRME DRNWDAYSNG NKLSFAGQSL  360
RNGVHGTNWS SIPGIKHATT TEIYNPQNTT RLQDYVNGIR TEYRLNQFQQ QKPAQMEIDF  420
SGATSRPSVI SQPGSAESEH SDAEVSGRDD RAGPSDDRRP RKRGRKPANG REEPLNHVEA  480
ERQRREKLNQ RFCALRAVVP NISKMDKASL LGDAISYITE LQKKLKDMET EREKHNNASK  540
DKTSSTEANS GADSQTQLSD VEVQAVHDEV VVKVSCALDS HPVARVIRAF KESEINVVDS  600
KLAAGTDTVF HTFVIRSDDS DQLTKEKLLA AFTHESKSLQ GPSSTGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A8e-22432355192Transcription factor MYC3
4rs9_A8e-22432355192Transcription factor MYC3
4rqw_B8e-22432355192Transcription factor MYC3
4rqw_A8e-22432355192Transcription factor MYC3
4ywc_B2e-214322844224Transcription factor MYC3
4ywc_A2e-214322844224Transcription factor MYC3
4rru_A2e-214322844224Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1457465RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696336.10.0PREDICTED: transcription factor bHLH13-like
TrEMBLA0A0J8D3C60.0A0A0J8D3C6_BETVU; Uncharacterized protein
STRINGVIT_15s0046g00320.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-170bHLH family protein