PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013352-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 468aa    MW: 51447.1 Da    PI: 5.8272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013352-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.7e-13237288155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ +  Lr+l+P++   + ++ + a+i   A+e++++L+
  AHYPO_013352-RA 237 QRMTHIAVERNRRKQMNEHLRVLRSLMPSS---YVQRGDQASIIGGAIEFVRELE 288
                      79****************************...9*****************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.5E-14235291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-13235292No hitNo description
SuperFamilySSF474591.7E-16236305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288236287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-10237288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-9242293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MQKEESYTVA TQAGGKSVAD CNEEHSSTPP DPTYNYQHTN TSITGSLDYN ILNNPSNTEP  60
INNLILSRTG YQEQPNNTMN CVDRTLSFAD VMQFADFGPK LALTHPQTNN NDHDEHNING  120
IDPVYFLKFP VLGSSSHNTA PYNHSGYNHQ QENAGSVAGV SNNMSNSYTN PVQLEFLSNS  180
HDDNLVGLSL EEKLEPISTG GGGGGGGVAE GINKSSGNTT KRKRPRTIKT NEEVESQRMT  240
HIAVERNRRK QMNEHLRVLR SLMPSSYVQR GDQASIIGGA IEFVRELEQL LQCLESQKRR  300
RLYGDQARPM VDSSPSSSAV LGLVQQTPPQ FPPPPGNQYV HLQSDDDQLR LMDHQPNPTP  360
GPGGLGLLQE ETAESKSCIA DVEVKVLGFD ALIKILSRRR PGQLIKAIAA LEDLHFSILH  420
TNITTIEQTI LYSFNVKVGN EARFTAEDIA TSVQQIFTFI HANSNII*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237248RMTHIAVERNRR
2297301KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694945.11e-168PREDICTED: transcription factor FAMA-like
SwissprotQ56YJ81e-127FAMA_ARATH; Transcription factor FAMA
TrEMBLA0A0J8BDA01e-168A0A0J8BDA0_BETVU; Uncharacterized protein
STRINGscaffold_302925.11e-127(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-108bHLH family protein