PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013209-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family LBD
Protein Properties Length: 210aa    MW: 23060.2 Da    PI: 6.3405
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013209-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260379.3e-12246140
           DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGas 40
                     +C++C++lr++C+++C+l+p++     p++q++++ +v+k+FG++
  AHYPO_013209-RA  2 SCNGCRILRKGCSESCILRPCLqwidtPESQAHATVFVAKFFGRA 46
                     6******************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.4E-8246IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSCNGCRILR KGCSESCILR PCLQWIDTPE SQAHATVFVA KFFGRAACGR TVNPVSGAVG  60
LLWTGNWHLC QAAVETVLRG GTLRPISEFL VGAPASPFPI TAEVEDNSEV ICFPRAAKDE  120
SWRKQIGTTM IHSSEFSPPS RFTDCKRIKE EDDYHVRHLD LSLTPPTFIQ APPPQRPGTP  180
SLNSEESAAT TVSFESDDYY QPKTLNLFV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021714438.11e-114LOB domain-containing protein 38-like
SwissprotQ9SN235e-57LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A0K9Q7W42e-98A0A0K9Q7W4_SPIOL; Uncharacterized protein
STRINGXP_010679613.11e-101(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-59LOB domain-containing protein 38