PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013130-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 430aa    MW: 46863.2 Da    PI: 7.7974
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013130-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.9e-063203591255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  AHYPO_013130-RA 320 RREKISERMKLLQDLVPGC----DKVTGKALMLDEIINYVQSLQ 359
                      9*****************9....555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.687308358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-4314364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-12319377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.70E-7320363No hitNo description
Gene3DG3DSA:4.10.280.105.9E-13321376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEKEFFLNGG IHNPSLQFEA PFSWHTMEIQ TSQSPDCFLS TPPPTDQFES ALSSMVSSPA  60
ASNSPLSNDN FMIRELIGKL GSICNSGDIT NNSCYSTPLS SPPKMGIPMP NMDHLVKENL  120
PILGNLPAMM GDPGFAERAA RFSSFGSRSF NGRTTQFGMN NSTKNSNNGN GELGFPSNFS  180
NLGGNGKLQR VSSSPSLKEI GSQCENNNNR KHGGNFGQEC NNSRENSSIS GQNLGGENGS  240
NRKRKAPTNK GKSKELQSQP HLPSSSNKVA ENGEDSSAKR SKSEESGEAK REENRGDDGK  300
KQSNGNQKPP EPPKDYIHVR REKISERMKL LQDLVPGCDK VTGKALMLDE IINYVQSLQR  360
QVEFLSMKLA SVNPRLDFNM GNLFSKDLPS LCEGDLQSIV QMGYGQKENG FQSQPLHGSN  420
PSPLMKIEF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863521.10.0transcription factor bHLH62-like
TrEMBLA0A0K9RKW51e-175A0A0K9RKW5_SPIOL; Uncharacterized protein
STRINGXP_010685111.11e-174(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.19e-49bHLH family protein