PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013085-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WOX
Protein Properties Length: 136aa    MW: 15899.9 Da    PI: 10.0409
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013085-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.72.3e-143461957
                     HHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox 19 Fek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     ++   r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  AHYPO_013085-RA  3 YRGgMRTPNAQQIEQITEQLskygKIEGKNVFYWFQNHKARERQ 46
                     565589************************************97 PP

2Wus_type_Homeobox88.56.7e-292481965
  Wus_type_Homeobox 19 lyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ly+ G+rtPn+++i++it++L++yGkie+kNVfyWFQN+kaRerqkq
    AHYPO_013085-RA  2 LYRGGMRTPNAQQIEQITEQLSKYGKIEGKNVFYWFQNHKARERQKQ 48
                       9********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500718.956147IPR001356Homeobox domain
PfamPF000465.1E-12346IPR001356Homeobox domain
SuperFamilySSF466892.89E-8852IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-5946IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MLYRGGMRTP NAQQIEQITE QLSKYGKIEG KNVFYWFQNH KARERQKQKR SILGLTHNPR  60
TPPPANTTHQ INNSITLTLH TRAESEEQEI SPHKRKFRSW MFDCSEENQK KDNSEQEGKT  120
LELFPLHPEG LIRIT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021726652.19e-68WUSCHEL-related homeobox 4-like isoform X2
SwissprotQ6X7J95e-34WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A0K9R3U05e-56A0A0K9R3U0_SPIOL; Uncharacterized protein
STRINGXP_010688717.13e-62(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.12e-36WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]