PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013017-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 349aa    MW: 38390.5 Da    PI: 6.4436
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013017-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.2e-05731061855
                      HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + f+ Lr+l+P+     ++K + a+ L +++eY++ Lq
  AHYPO_013017-RA  73 DLFQILRDLIPHG----DQKRDTASFLLEVIEYVQLLQ 106
                      679*********7....79****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.09E-1138128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1739127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.80140105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.66E-1142110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MKSGKGNNLD DDEDYEDDFT SKKESSSANK DSKNNDKASA MRSKHSVTEQ RRRSKINERQ  60
AKPAWDRKGF GDDLFQILRD LIPHGDQKRD TASFLLEVIE YVQLLQEKVQ KFEGSYQGWS  120
AEPTKLMPWF IRSVIWKQRH SHWRVQSFLG HPPAVKNGSN SGSTLKFDER NFSTNPGVAA  180
NVQTPVTNDS VHDAFRALDQ QSELVDKEAT LPTPFSLQMP TVVPTNGEDS RLSQRPASGS  240
PSAPCPISND DQQGEHTIEG GTISISSSYS HGLLMTLTQA LQSSGVDLSQ ASISIQIDLG  300
KRAKQGATPG LCGNKESENV VSHDLNMGHV GDGSGMEELE QPHKKLKS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681151.11e-169PREDICTED: transcription factor BIM2
SwissprotQ9CAA41e-90BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0J8EZR01e-166A0A0J8EZR0_BETVU; Uncharacterized protein
STRINGVIT_01s0010g00540.t011e-104(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-71BES1-interacting Myc-like protein 2