PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012796-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 245aa    MW: 28063.9 Da    PI: 6.7252
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012796-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH162.2e-05109159154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      rr+++ne  ++ R+++ +++  L +llP     +  + + a++Le+A +Y k L
  AHYPO_012796-RA 109 RRKNNNETKKNIRHKMSEKIYSLGKLLPGG---HRHRKNTAAMLEEAEKYAKFL 159
                      89***************************6...5556667999****9997776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-9106168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-8106168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.877108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.63E-6108164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MAPDSSPELF NHLENPFPYN YNHAYDYNIN PVVHETLSQI VPNPFYFFHE LQPSPVSEIS  60
PEFYNPSLPN LLSLENEIQS QPPETIKDDY TLDSILENYL KTSKSNQKRR KNNNETKKNI  120
RHKMSEKIYS LGKLLPGGHR HRKNTAAMLE EAEKYAKFLE AQVEALKCMP TESKLSELSE  180
LGGNHELGKL SRQQVLQIVV NSPKAQMVMA DNGWCLVSAE QIELMKRIEA RQKVIQQLMN  240
NIPL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021860729.11e-70uncharacterized protein LOC110799769
TrEMBLA0A0K9RTT48e-71A0A0K9RTT4_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.14e-21bHLH family protein