PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012706-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 119aa    MW: 14072.5 Da    PI: 6.8058
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012706-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.7e-154493255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     r + +e E+rRR++iN++f+ L++l+P++    ++K +Ka+ L + +eY+++Lq
  AHYPO_012706-RA 44 RSKQSETEQRRRSKINERFQILKDLIPPN----DQKRDKASLLLEDIEYVQYLQ 93
                     77889***********************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-1739105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1940106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.0824292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-134493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-124497No hitNo description
SMARTSM003531.5E-124898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MVRTVIPPHH QRHEDNDAED IATGTDTNPH REGKRAEHKP NNYRSKQSET EQRRRSKINE  60
RFQILKDLIP PNDQKRDKAS LLLEDIEYVQ YLQENSQVYE GSYHQVWSQE PTKLIPWV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694251.12e-52PREDICTED: transcription factor BIM2 isoform X2
SwissprotQ9CAA49e-31BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0J8D3163e-52A0A0J8D316_BETVU; Uncharacterized protein
STRINGPOPTR_0004s11180.12e-34(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-32BES1-interacting Myc-like protein 2