PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012613-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 93aa    MW: 10515.9 Da    PI: 10.7265
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012613-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.39.9e-0719601454
                     HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     d+i +  ++L++llP+     +s K+s a +L+++++ IksL
  AHYPO_012613-RA 19 DQIQDLVSKLQQLLPElHNTRRSDKVSAARVLQETCNRIKSL 60
                     6899999*********6669999*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-6379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.398560IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-81979IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSRRSRSRQ SGSSRVTDDQ IQDLVSKLQQ LLPELHNTRR SDKVSAARVL QETCNRIKSL  60
HKEVDDLSVR LSQLLETTDT NQAALIRNLL MQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404347.19e-40hypothetical protein EUTSA_v10010858mg
SwissprotF4JCN95e-41PRE4_ARATH; Transcription factor PRE4
TrEMBLA0A0K9RZW51e-41A0A0K9RZW5_SPIOL; Uncharacterized protein
STRINGAT3G47710.11e-38(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.11e-34activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1