PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011939-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family LBD
Protein Properties Length: 112aa    MW: 12450.3 Da    PI: 8.203
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011939-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601063.1e-337100193
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++Cv+apy+  ++  ++f +vhk+FGasnv++ll +lpe+ r +a+ +l +eA ar+rdPvyG+v+ i +lqqq   +  e
  AHYPO_011939-RA   7 SCGACKFLRRKCTSECVFAPYYSYNEaVAHFGAVHKVFGASNVSRLLLHLPEQFRGEAALTLSFEALARIRDPVYGCVAYIYALQQQPIDATRE 100
                      6*********************998856**********************************************************98766655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.5066108IPR004883Lateral organ boundaries, LOB
PfamPF031956.0E-327100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MTGISTSCGA CKFLRRKCTS ECVFAPYYSY NEAVAHFGAV HKVFGASNVS RLLLHLPEQF  60
RGEAALTLSF EALARIRDPV YGCVAYIYAL QQQPIDATRE NRSLDYVNLM F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2931057105LOB family transfactor Ramosa2.1
5ly0_B2e-2931057105LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691088.11e-57PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9LHS84e-44LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A2I0KV468e-49A0A2I0KV46_PUNGR; Uncharacterized protein
TrEMBLB9HT793e-48B9HT79_POPTR; Uncharacterized protein
STRINGXP_010691088.14e-57(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-46LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]