PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010177-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 133aa    MW: 15426.8 Da    PI: 10.1904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010177-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-114087455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                     +h+ +Er RR+ri +++  L++l+P +     +K   K++iL   ++Y++sLq
  AHYPO_010177-RA 40 SHSLAERVRRQRISDKMKVLQSLVPGC-----EKmTGKVQILDNIINYVHSLQ 87
                     8*************************9.....5669****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-1634102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.0373686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-163997IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-94087IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.89E-84091No hitNo description
SMARTSM003531.5E-94292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MNKNENINKG VERMTVHDED GRRDDEYVYL RAKRGQTINS HSLAERVRRQ RISDKMKVLQ  60
SLVPGCEKMT GKVQILDNII NYVHSLQDHV KNLTEKLALV DPTFNLNYLA HRPIAILMRN  120
HMLLRPILNA RE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682661.19e-43PREDICTED: transcription factor BEE 2
SwissprotQ6NKN93e-29BH074_ARATH; Transcription factor bHLH74
TrEMBLI6MJ735e-40I6MJ73_BETVU; Putative cryptochrome-interacting basic helix-loop-helix 5 (Fragment)
STRINGXP_010682661.13e-42(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-31bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]